Fardina Alam
Fardina Alam
Lecturer, Computer Science
Fardina Alam is a computer scientist and data science educator whose work spans machine learning, computational biology, generative AI, and responsible AI in education. At the University of Maryland, her academic work bridges the Department of Computer Science and the Science Academy in CMNS, with a focus on interdisciplinary data science education.
Alam earned her Ph.D. in Computer Science from George Mason University, where her doctoral research focused on deep latent-variable models for learning representations of protein tertiary structures. Her research develops generative and representation-learning methods for modeling protein structure, characterizing structural relationships, and generating biologically plausible conformations. Her broader interests include structural bioinformatics, deep generative modeling, and AI-driven scientific discovery.
Her work also examines the integration of generative AI into data science and computing education, particularly its implications for student learning, AI literacy, academic integrity, and responsible adoption. In 2025 and 2026, she served as Administrative and Academic Lead for the Break Through Tech Instructional Hub at UMD, contributing to AI instruction and coordinating the academic implementation of Cornell Tech’s Break Through Tech AI program at UMD.
Latest Papers
ConSOLAE: Learning Smooth and Generalizable Representations for Protein Fold Recognition
Author(s): Shraddha Patre, Riya Kanani, Aarnav Tare, et. al
RAGent: A Self-Learning RAG Agent for Adaptive Data Science Education
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International Computer Programming Education Conference (ICPEC)
Author(s): Mariia Vetluzhskikh, Fardina Fathmiul Alam
SuperFoldAE: Enhancing Protein Fold Classification with Autoencoders
Author(s): Shraddha Patre, Riya Kanani, Fardina Fathmiul Alam
Equivariant Encoding based GVAE (EqEn-GVAE) for Protein Tertiary Structure Generation
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2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
Author(s): Taseef Rahman, Fardina Fathmiul Alam, Amarda Shehu
Data Size and Quality Matter: Generating Physically-Realistic Distance Maps of Protein Tertiary Structures
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Biomolecules
Author(s): Fardina Fathmiul Alam, Amarda Shehu
Deep Latent-Variable Models for Controllable Molecule Generation
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2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
Author(s): Yuanqi Du, Yinkai Wang, Fardina Alam, et. al
Generating Physically-Realistic Tertiary Protein Structures with Deep Latent Variable Models Learning Over Experimentally-available Structures
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2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
Author(s): Fardina Fathmiul Alam, Amarda Shehu
Unsupervised multi-instance learning for protein structure determination
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Journal of Bioinformatics and Computational Biology
Author(s): Fardina Fathmiul Alam, Amarda Shehu
Towards more equitable question answering systems: How much more data do you need?
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Proceedings of the 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing (Volume 2: Short Papers)
Author(s): Arnab Debnath, Navid Rajabi, Fardina Fathmiul Alam, et. al