Rob Patro
Rob Patro
Graduate Program Affiliations
- Bioinformatics & Computational Biology (BIOI)
- Biological Sciences (BISI): Computational Biology, Bioinformatics, and Genomics (CBBG)
- Computer Science (CMSC)
Research Areas
Algorithms and Theory, Bioinformatics and Computational Biology, High Performance and Scientific Computing
Latest Papers
Highly Constrained Kinetic Models for Single-Cell Gene Expression Analysis
Author(s): Hyeon Jin Cho, Christopher H. Bohrer, Pawel Trzaskoma, et. al
kache-hash: A dynamic, concurrent, and cache-efficient hash table for streaming k-mer operations
Author(s): Jamshed Khan, Rob Patro, Prashant Pandey
Optimizing sparse and skew hashing: faster k-mer dictionaries
Author(s): Giulio Ermanno Pibiri, Rob Patro
Kaminari: a frugal colored index for approximate k-mer queries
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Bioinformatics Advances
Author(s): Victor Levallois, Yoshihiro Shibuya, Bertrand Le Gal, et. al
mim: A lightweight auxiliary index to enable fast, parallel, gzipped FASTQ parsing
Author(s): Rob Patro, Siddhant Bharti, Prajwal Singhania, et. al
QCatch: A framework for quality control assessment and analysis of single-cell sequencing data
Author(s): Yuan Gao, Dongze He, Rob Patro
Kaminari: a resource-frugal index for approximate colored k-mer queries
Author(s): Victor Levallois, Yoshihiro Shibuya, Bertrand Le Gal, et. al
Faster and Scalable Parallel External-Memory Construction of Colored Compacted de Bruijn Graphs with Cuttlefish 3
Author(s): Jamshed Khan, Laxman Dhulipala, Prashant Pandey, et. al
Alevin-fry-atac enables rapid and memory frugal mapping of single-cell ATAC-seq data using virtual colors for accurate genomic pseudoalignment
Author(s): Noor Pratap Singh, Jamshed Khan, Rob Patro
Collapsible tree: interactive web app to present collapsible hierarchies
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Bioinformatics
Author(s): Yuan Gao, Rob Patro, Peng Jiang, et. al
